profiles

Vertical profiles of temperatures and fluxes

Note

This is an optional struct that requires options.calc_vert_profiles to be calculated and output

Calculated

RTMo()

Variations

RTMf() if options.calc_fluor

ebal() if options.calc_ebal

Output file

if options.calc_vert_profiles

• layer_aPAR.dat

• layer_aPAR_Cab.dat

if options.calc_fluor & options.calc_vert_profiles

• layer_fluorescence.dat

if options.calc_ebal & options.calc_vert_profiles

• leaftemp.dat

• layer_h.dat

• layer_le.dat

• layer_a.dat

• layer_NPQ.dat

• layer_rn.dat

Used

variable	user
etah, etau	RTMf()
Knh, Khu	RTMz()

Fields

Fields calculated in RTMo() if options.calc_vert_profiles

variable	units	type	description
Pn1d	umol m-2 s-1	[60 x 1] double	absorbed photosynthetically active radiation (aPAR) per leaf layer
Pn1d_Cab	umol m-2 s-1	[60 x 1] double	aPAR per leaf layer

Fields added in RTMf() if options.calc_fluor

variable	units	type	description
fluorescence	W m-2	[60 x 1] double	upward fluorescence per layer

Fields added in ebal() if options.clc_ebal

Warning

Averaging temperatures is not physically accurate

variable	units	type	description
etah	-	[60 x 1] double	Fs / Fo ratio for shaded leaves
etau	-	[13 x 36 x 60] double	Fs / Fo ratio for sunlit leaves
Tchave	ºC	double	mean temp shaded leaves
Tch	ºC	[60 x 1] double	leaf temperature of shaded leaves, per layer
Tcu1d	ºC	[60 x 1] double	leaf temperature of sunlit leaves, per layer
Tc1d	ºC	[60 x 1] double	weighted average leaf temperature, per layer
Hc1d	W m-2	[60 x 1] double	mean sensible heat leaves, per layer
lEc1d	W m-2	[60 x 1] double	mean latent heat leaves, per layer
A1d	umol m-2 s-1	[60 x 1] double	mean photosynthesis leaves, per layer
Rn1d	W m-2	[60 x 1] double	net radiation per leaf layer
F_Pn1d		[60 x 1] double	mean fluorescence leaves, per layer
qE		[60 x 1] double	average NPQ = 1-(fm-fo)/(fm0-fo0), per layer
Knu		[13 x 36 x 60] double	NPQ of sunlit leaves
Knh		[60 x 1] double	NPQ of shaded leaves