leafopt

Leaf optical properties

Note

• This output is used, available in the workspace after a SCOPE run but is not written to any output file

• leafoptZ is exactly the same struct calculated by selected version of Fluspect but when all violaxanthin is transformed to zeaxanthin (V2Z == 1)

Calculated

fluspect_B_CX_PSI_PSII_combined()

Variations

fluspect_B_CX() if options.calc_PSI =>

Mb is partitioned to MbI, MbII

Mf is partitioned to MfI, MfII

Output file

• not saved

Used

variable	user
refl, tran	RTMf() RTMo() RTMt_planck() RTMt_sb() RTMz()
Mb, Mf	RTMf()
kChlrel	RTMo()
reflZ, tranZ	RTMz()

Fields

Fields calculated in fluspect_B_CX_PSI_PSII_combined() or fluspect_B_CX() if options.calc_PSI

variable	units	type	description
refl	-	[2162 x 1] double	leaf reflectance
tran	-	[2162 x 1] double	leaf transmittance
kChlrel	-	[2001 x 1] double
Mb	-	[211 x 351] double	backward scattering fluorescence matrix
Mf	-	[211 x 351] double	forward scattering fluorescence matrix
Mbl_rc	-	[211 x 351] double	backward scattering fluorescence matrix without re-absorption
Mfl_rc	-	[211 x 351] double	forward scattering fluorescence matrix without re-absorption

These values are added from leafoptZ, calculated with leafbio.V2Z == 1.

variable	units	type	description
reflZ	-	[2162 x 1] double	leaf reflectance with only zeaxanthin
tranZ	-	[2162 x 1] double	leaf transmittance with only zeaxanthin